NAME

       sand_uncompress_reads - uncompress sequence data

SYNOPSIS

       sand_uncompress_reads [-qvh] [infile] [outfile]

DESCRIPTION

       sand_uncompress_reads  reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1)
       and sand_align_master(1).  and produces output in the standard FASTA format.

       If the output file is omitted, standard output is used.  if the input file is omitted, standard input  is
       used.   After  completing the compression, this program will output a summary line of sequences and bytes
       compressed.

OPTIONS

        -q    Quiet mode: suppress summary line.

        -h    Display version information.

        -v    Show help text.

EXIT STATUS

       On success, returns zero.  On failure, returns non-zero.

EXAMPLES

       To uncompress mydata.cfa into mydata.fasta:

               % sand_uncompress_reads mydata.cfa mydata.fa

COPYRIGHT

       The Cooperative Computing Tools are Copyright (C) 2022 The University of Notre Dame.   This  software  is
       distributed under the GNU General Public License.  See the file COPYING for details.

SEE ALSO

       •   Cooperative Computing Tools Documentation

       •   SAND User Manual

       •   sand_filter_master(1)   sand_filter_kernel(1)   sand_align_master(1)  sand_align_kernel(1)  sand_com‐
           press_reads(1)  sand_uncompress_reads(1)  work_queue_worker(1)

CCTools 7.14.5 FINAL                                                                    sand_uncompress_reads(1)