NAME

       pxtrt - trace big tree from taxon list and produce newick

SYNOPSIS

       pxtrt [OPTIONS]...

DESCRIPTION

       This will trace a big tree given a taxon list and produce newick.  Data can be read from a file or STDIN.

OPTIONS

       -t, --treef=FILE
              input tree file, STDIN otherwise

       -n, --names=CSL
              names sep by commas (NO SPACES!)

       -f, --namesf=FILE
              names in a file (each on a line)

       -c, --comp
              take the complement (i.e. remove any taxa not in list)

       -s, --silent
              suppress warnings of missing tips

       -o, --outf=FILE
              output tree file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2024 FePhyFoFum License GPLv3

pxtrt 1.3.1                                         June 2024                                           PXTRT(1)