NAME

       mincpik - MNI medical image format tools

DESCRIPTION

       Option h is ambiguous (help, horizontal) Usage:

              mincpik [options] <infile>.mnc [<image.type>]

              mincpik  generates  image files from MINC volumes using the Imagemagick convert utility. Use -help
              or -man for more information and examples

OPTIONS

       -v, --verbose

              Be noisy when doing things

       --version

              Print version number and exit

       -?, --help

              Dump some quick help output

       --man

              Dump a man page

       -c --clobber

              overwrite the output file if it exists already

       -f --fake

              do a dry run, (echo cmds only). This is usually used in combination with -verbose to echo commands
              only

       --scale

              scaling factor for resulting  image,  by  default  images  are  output  at  twice  their  original
              resolution

       --width

              autoscale the resulting image to have a fixed image width (in pixels)

       --depth

              bitdepth for resulting image 8 or 16 (MSB machines only!)

       --title

              add  a  title to the resulting image, if just this option is specified the text used for the title
              is the name of the input image file.

       --title_text

              use the input string for the  title  [default:  input-filename].  This  option  must  be  used  in
              conjunction with -title

       --title_size

              font point size for the title

       --anot_bar

              create an annotated bar to match the image (use height of the output image)

              Image range and lookup table options:

       --range

              valid range of values for MINC file

       --image_range

              range of image values to use for pixel intensity

       --auto_range

              automatically determine image range using a 5 and 95% PcT.  (histogram)

       --lookup

              arguments to pass to minclookup

              Slicing options:

       -s --slice

              slice number to get. (note this is in voxel co-ordinates)

       -z --axial --transverse

              get an axial/transverse (z) slice

       -y --coronal

              get a coronal (y) slice

       -x --sagittal

              get a sagital (x) slice

              Triplanar options:

       -t --triplanar

              create a triplanar view of the input file

       --tilesize

              pixel size for each image in a triplanar

       --sagittal_offset

              offset the sagittal slice from the centre

       --sagittal_offset_perc

              offset the sagittal slice by a percentage from the centre

       --vertical

              create a vertical triplanar view (Default)

       --horizontal

              create a horizontal triplanar view

mincpik 2.3.00                                      July 2020                                         MINCPIK(1)