NAME

       ktGetTaxIDFromAcc - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Description:

              Translates  accessions (from arguments or <stdin>) to NCBI taxonomy IDs. The accession can be bare
              or in the fourth field of pipe notation (e.g.  "gi|12345|xx|ABC123.1|", ignoring fasta tag markers
              [">"]). Inputs that are bare numbers will be assumed to be taxonomy  IDs  already  and  preserved.
              Accessions with no taxonomy IDs in the database will return 0.

       Usage:

              ktGetTaxIDFromAcc [options] [acc1 acc2 ...] [< acc_list] > tax_ID_list

              Command line example:

              ktGetTaxIDFromAcc A00001.1 A00002.1

              Fasta tag example:

              grep ">" sequence | ktGetTaxIDFromAcc > sequence.tax

OPTIONS

       [-p]   Prepend tax IDs to the original lines (separated by tabs).

       [-a]   Append tax IDs to the original lines (separated by tabs).

       [-f] <integer>
              Field of accessions. [Default: '1']

       [-tax <string>
              Path to directory containing a taxonomy database to use.

ktGetTaxIDFromAcc 2.8                               June 2021                               KTGETTAXIDFROMACC(1)