NAME

       kmc_tools-sort - sort KMC databases

SYNOPSIS

       kmc_tools sort <inputdb> [input_params] <output> [output_params]

DESCRIPTION

       Converts database produced by KMC2.x to KMC1.x database format (which contains k-mers in sorted order)

OPTIONS

       For each input there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

       For output there are additional parameters:

       -cs<value>
           maximal value of a counter

EXAMPLE

           kmc_tools sort wy_kmc2 -ci3 -cx1000 wy_kmc1 -cs255

AUTHOR

       KMC was originally written by:

       •   Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

       •   Marek Kokot

       •   Szymon Grabowski

       •   Agnieszka Debudaj-Grabysz

COPYING

       KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

                                                                                               KMC_TOOLS-SORT(1)