NAME

       domainreso - Remove low resolution domains from a DCF file.

SYNOPSIS

       domainreso -cpdbpath dirlist -dcfinfile infile -threshold float -dcfoutfile outfile

       domainreso -help

DESCRIPTION

       domainreso is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "PROTEIN:3D STRUCTURE" command group(s).

OPTIONS

   Input section
       -cpdbpath dirlist
           This option specifies the location of domain CCF file (clean coordinate files) (input). A 'clean
           cordinate file' contains coordinate and other data for a single PDB file or a single domain from SCOP
           or CATH, in CCF format (EMBL-like). The files, generated by using PDBPARSE (pdb files) or DOMAINER
           (domains), contain 'cleaned-up' data that is self-consistent and error-corrected. Records for residue
           solvent accessibility and secondary structure are added to the file by using PDBPLUS. Default value:
           ./

       -dcfinfile infile
           This option specifies the name of DCF file (domain classification file) (input). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

   Required section
       -threshold float
           This option specifies the threshold for inclusion (Angstroms). Domains exceeding the threshold for
           inclusion (Angstroms) will not be given in the output file. Default value: 2.8

   Output section
       -dcfoutfile outfile
           This option specifies the name of DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: test.scop

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       domainreso is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

DOMAINATRIX 0.1.0+20100721                         08/11/2010                                     DOMAINRESO(1e)