NAME

       cpgreport - Identify and report CpG-rich regions in nucleotide sequence(s)

SYNOPSIS

       cpgreport -sequence seqall -score integer -outfile outfile -outfeat featout

       cpgreport -help

DESCRIPTION

       cpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Nucleic:CpG Islands" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Required section
       -score integer
           This sets the score for each CG sequence found. A value of 17 is more sensitive, but 28 has also been
           used with some success. Default value: 17

   Output section
       -outfile outfile

       -outfeat featout
           File for output features

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       cpgreport is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                      CPGREPORT(1e)