NAME

       tombo - identification of modified nucleotides from raw nanopore sequencing data

SYNOPSIS

       tombo [-h] [-v] {resquiggle,preprocess,filter,detect_modifications,text_output,build_model,plot} ...

DESCRIPTION

       Tombo  is  a  suite  of  tools  primarily  for  the  identification of modified nucleotides from nanopore
       sequencing data.

       Tombo also provides tools for the analysis and visualization of raw nanopore signal.

Tombo command groups (additional help available within each command group):

       resquiggle
              Re-annotate raw signal with genomic alignment from existing basecalls.

       preprocess
              Pre-process nanopore reads for Tombo processing.

       filter Apply filter to Tombo index file for specified criterion.

       detect_modifications
              Perform statistical testing to detect non-standard nucleotides.

       text_output
              Output Tombo results in text files.

       build_model
              Create canonical and alternative base Tombo models.

       plot   Save plots to visualize raw nanopore signal or testing results.

   optional arguments:
       -h, --help
              show this help message and exit

       -v, --version
              show Tombo version and exit.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

tombo 1.5.1                                         June 2020                                           TOMBO(1)