NAME

       pxrevcomp - reverse complement sequences

SYNOPSIS

       pxrevcomp [OPTIONS]... [FILE]...

DESCRIPTION

       Reverse  complement  sequences.   This  will  take fasta, fastq, phylip, and nexus formats from a file or
       STDIN.  Results are written in fasta format.

OPTIONS

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -i, --ids=IDS
              a comma sep list of ids to flip (NO SPACES!)

       -g, --guess
              EXPERIMENTAL: guess whether there are seqs that need to be rev comp. uses edlib library  on  first
              seq

       -p, --pguess
              EXPERIMENTAL: progressively guess

       -m, --sguess
              EXPERIMENTAL: sampled guess

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim)

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2024 FePhyFoFum License GPLv3

pxrevcomp 1.3.1                                     June 2024                                       PXREVCOMP(1)