NAME

       propmapped - toolkit for processing next-gen sequencing data

DESCRIPTION

       propMapped v2.0.4

              Calculate the proportion of mapped reads/fragments.

       Usage:

              ./prommapped [options] -i <file>

       Required arguments:

       -i <string>
              An input file containing read mapping results. Both SAM or BAM formats are supported.

       Optional arguments:

       -o <string>
              Name of output file including mapping statistics.

       -f     If  specified,  fragments (read pairs) will be counted instead of individual reads. This option is
              only applicable for paired-end reads.

       -p     If specified, only properly paired reads will be counted.  This  option  is  only  applicable  for
              paired-end reads.

AUTHOR

        This manpage was written by Alexandre Mestiashvili for the Debian distribution and
        can be used for any other usage of the program.

propmapped 2.0.3                                   March 2023                                      PROPMAPPED(1)