NAME

       picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

SYNOPSIS

       [-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input
       [input ...]]

DESCRIPTION

       A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

OPTIONS

   positional arguments:
       input  list of directories or fast5 files to shrink

   optional arguments:
       -h, --help
              show this help message and exit

       -p PATTERN, --pattern PATTERN
              String or regex to replace

       -r REPLACEMENT, --replacement REPLACEMENT
              String or regex replacement for PATTERN

       -v, --version
              show version number and exit

       -y     skip confirm step

       -t INT, --threads INT
              number of threads (Default: 1)

       --prefix STR
              add prefix to output files to prevent overwrite

       --skip-root, --no-skip-root
              ignore files in root input directories for albacore realtime compression (Default: --no-skip-root)

       --print-every INT
              print a dot every approximately INT files, or -1 to silence (Default: 100)

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

picopore-rename 1.2.0                               June 2020                                 PICOPORE-RENAME(1)