NAME

       pepwindowall - Draw Kyte-Doolittle hydropathy plot for a protein alignment

SYNOPSIS

       pepwindowall -sequences seqset [-datafile datafile] [-length integer] [-normalize boolean] -graph xygraph

       pepwindowall -help

DESCRIPTION

       pepwindowall is a command line program from EMBOSS (“the European Molecular Biology Open Software
       Suite”). It is part of the "Protein:Properties" command group(s).

OPTIONS

   Input section
       -sequences seqset
           File containing a sequence alignment

       -datafile datafile
           Default value: Enakai.dat

   Additional section
       -length integer
           Default value: 19

       -normalize boolean
           Default value: N

   Output section
       -graph xygraph

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       pepwindowall is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                   PEPWINDOWALL(1e)