NAME

       patmatmotifs - Scan a protein sequence with motifs from the PROSITE database

SYNOPSIS

       patmatmotifs -sequence sequence [-full boolean] [-prune boolean] -outfile report

       patmatmotifs -help

DESCRIPTION

       patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open Software
       Suite”). It is part of the "Protein:Motifs" command group(s).

OPTIONS

   Input section
       -sequence sequence

   Additional section
       -full boolean
           Default value: N

       -prune boolean
           Ignore simple patterns. If this is true then these simple post-translational modification sites are
           not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and
           tyr_phospho_site. Default value: Y

   Output section
       -outfile report

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       patmatmotifs is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                   PATMATMOTIFS(1e)