NAME

       nthash - Recursive hash function for hashing all possible k-mers in a DNA/RNA sequence

SYNOPSIS

       ntHash -k VAR -o VAR [-f VAR] [-h] [-s VAR] [--long] [--binary] [--verbose] files

DESCRIPTION

       Unknown argument: --help

   Positional arguments:
       files  Input sequence files [nargs: 0 or more] [required]

   Optional arguments:

       -v, --version prints version information and exits

       -k     k-mer size [required]

       -o     Output file (for -f collect) or directory path [required]

       -f     Output  file  organization (store hashes for each 'file', 'record', or 'collect' all hashes into a
              single file [default: "file"]

       -h     Number of hashes per k-mer/seed [default: 1]

       -s     Input spaced seed patterns separated by commas (e.g. 1110111,11011011). Performs k-mer hashing  if
              no value provided.

       --long Optimize file reader for long sequences (>5kbp)

       --binary
              Output hashes in binary files (otherwise plain text)

       --verbose
              Print progress to stdout

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

nthash 2.3.0                                      October 2022                                         NTHASH(1)