NAME

       megahit_toolkit - ultra-fast and memory-efficient meta-genome assembler

SYNOPSIS

       megahit_toolkit <sub_program> [sub options]

DESCRIPTION

              sub-programs:

       assemble
              assemble from SdBG

       local  local asssembly

       iterate
              extract iterative edges

       buildlib
              build read library

       count  kmer counting

       read2sdbg
              build sdbg from reads

       seq2sdbg
              build sdbg from megahit contigs + edges

       contig2fastg
              convert MEGAHIT's k*.contigs.fa to fastg format

       readstat
              calculate read stats (# of reads, bases, longest, shortest, average)

       filterbylen
              filter contigs by length

       checkcpu
              check whether the run-time CPU supports POPCNT and BMI2

       checkpopcnt
              check whether the run-time CPU supports POPCNT

       checkbmi2
              check whether the run-time CPU supports BMI2

       dumpversion
              dump version

       kmax   the largest k value supported

AUTHOR

       This  manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage
       of the program.

megahit_toolkit 1.2.8                             October 2019                                MEGAHIT_TOOLKIT(1)