NAME

       kmc_tools-counters_subtract - calculate counters subtraction of two KMC databases

SYNOPSIS

       kmc_tools counters_subtract <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>

DESCRIPTION

       The output database will contain only k-mers that are present in the first input set and have counters
       higher than the appropriate k-mers in the second set. For each k-mer the counter is equal to the
       difference between the counter in the first set and the counter in the second set.

OPTIONS

       For each input there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

       For output there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

       -cs<value>
           maximal value of a counter

EXAMPLE

           kmc - k28 file1.fastq kmers1 tmp
           kmc - k28 file2.fastq kmers2 tmp
           kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract

AUTHOR

       KMC was originally written by:

       •   Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

       •   Marek Kokot

       •   Szymon Grabowski

       •   Agnieszka Debudaj-Grabysz

COPYING

       KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

                                                                                  KMC_TOOLS-COUNTERS_SUBTRACT(1)