NAME

       kmc_tools-compact - remove counters of k-mers

SYNOPSIS

       kmc_tools compact <inputdb> [input_params] <output>

DESCRIPTION

       This command removes counters from the database and stores only k-mers.

OPTIONS

       For each input there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

EXAMPLE

           kmc_tools compact wy_kmc2 -ci3 -cx1000 wy_kmc1

AUTHOR

       KMC was originally written by:

       •   Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

       •   Marek Kokot

       •   Szymon Grabowski

       •   Agnieszka Debudaj-Grabysz

COPYING

       KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

                                                                                            KMC_TOOLS-COMPACT(1)