NAME

       kma_index - creates the databases needed to run KMA, from a list of fasta files given

DESCRIPTION

              kma_index creates the databases needed to run KMA, from a list of fasta files given.  Options are:
              Desc:                                   Default:

       -i     Input/query file name (STDIN: "--")     None

       -o     Output file                             Input/template file

       -batch Batch input file

       -deCon File with contamination (STDIN: "--")   None/False

       -batchD
              Batch decon file

       -t_db  Add to existing DB                      None/False

       -k     Kmersize                                16

       -k_t   Kmersize for template identification    16

       -k_i   Kmersize for indexing                   16

       -ML    Minimum length of templates             kmersize (16)

       -CS    Start Chain size                        1 M

       -ME    Mega DB                                 False

       -NI    Do not dump *.index.b                   False

       -Sparse
              Make Sparse DB ('-' for no prefix)      None/False

       -ht    Homology template                       1.0

       -hq    Homology query                          1.0

       -and   Both homolgy thresholds has to be reached                       or

       -nbp   No bias print                           False

       -v     Version

       -h     Shows this help message

AUTHOR

       This  manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage
       of the program.

kma_index 1.3.23                                    July 2021                                       KMA_INDEX(1)