NAME

       index-extras - populate and index local BioConcepts, GeneRifs, and theme data

SYNOPSIS

       index-extras [[-path] dir [[-temp|-work|-working] dir]]

DESCRIPTION

       index-extras prepares a directory to hold local BioConcepts, GeneRifs, and Percha-Altman theme data, then
       downloads  full  dumps from NCBI and Zenodo servers, organizes the data into an rchive(1) trie, and fully
       indexes the resulting archive.

OPTIONS

       [-path] dir
              Place the local archive in dir.

       [-temp|-work|-working] dir
              Place intermediate subtrees in dir.

ENVIRONMENT

       EDIRECT_PUBMED_MASTER
              Local archive directory to use in the absence of  -path.   Expected  to  hold  an  absolute  path;
              mandatory when not supplying a path on the command line.

       EDIRECT_PUBMED_WORKING
              Directory  to hold intermediate subtrees in the absence of -temp|-work|-working.  Expected to hold
              an absolute path.  Defaults to the primary local archive directory when not set.

SEE ALSO

       custom-index(1), download-ncbi-data(1), index-pubmed(1), rchive(1), theme-aliases(1), xtract(1).

NCBI                                               2023-01-30                                    INDEX-EXTRAS(1)