NAME

       gt-seqstat - Calculate statistics for fasta file(s).

SYNOPSIS

       gt seqstat [options] file [...]

DESCRIPTION

       -v [yes|no]
           be verbose (default: no)

       -distlen [yes|no]
           show distribution of sequence length (default: no)

       -b [value]
           bucket size for distlen option (default: 100)

       -binary [yes|no]
           use a binary format for distlen output output filename: <first_input_filename>.distlen bucketsize: 1
           (default: no)

       -contigs [yes|no]
           summary of contigs set statistics (default: yes)

       -nstats
           list of N-values to calculate statistics for, terminated by --; if none given, N50 and N80 will be
           calculated

       -astretch [yes|no]
           show distribution of A-substrings (default: no)

       -genome [value]
           set genome length for NG50/NG80 calculation (default: 0)

       -help
           display help for basic options and exit

       -help+
           display help for all options and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.

GenomeTools 1.6.5                                  04/27/2024                                      GT-SEQSTAT(1)