Provided by: gromacs-data_2025.0-2_all bug

NAME
       gmx-dump - Make binary files human readable


SYNOPSIS
          gmx dump [-s <.tpr>] [-f <.xtc/.trr/...>] [-e <.edr>] [-cp <.cpt>]
                   [-p <.top>] [-mtx <.mtx>] [-om <.mdp>] [-[no]nr]
                   [-[no]param] [-[no]sys] [-[no]orgir]


DESCRIPTION
       gmx dump reads a run input file (.tpr), a trajectory (.trr/.xtc/tng), an energy file (.edr), a checkpoint
       file  (.cpt)  or  topology  file  (.top)  and  prints that to standard output in a readable format.  This
       program is essential for checking your run input file in case of problems.


OPTIONS
       Options to specify input files:

       -s <.tpr> (Optional)
              Run input file to dump

       -f <.xtc/.trr/...> (Optional)
              Trajectory file to dump: xtc trr cpt gro g96 pdb tng

       -e <.edr> (Optional)
              Energy file to dump

       -cp <.cpt> (Optional)
              Checkpoint file to dump

       -p <.top> (Optional)
              Topology file to dump

       -mtx <.mtx> (Optional)
              Hessian matrix to dump

       Options to specify output files:

       -om <.mdp> (Optional)
              grompp input file from run input file

       Other options:

       -[no]nr (yes)
              Show index numbers in output (leaving them out makes comparison  easier,  but  creates  a  useless
              topology)

       -[no]param (no)
              Show  parameters  for  each  bonded interaction (for comparing dumps, it is useful to combine this
              with -nonr)

       -[no]sys (no)
              List the atoms and bonded interactions for the whole system instead of for each molecule type

       -[no]orgir (no)
              Show input parameters from tpr as they were written by the version that produced the file, instead
              of how the current version reads them


KNOWN ISSUES
       • The .mdp file produced by -om can not be read by grompp.


SEE ALSO
       gmx(1)

       More information about GROMACS is available at <http://www.gromacs.org/>.


COPYRIGHT
       2025, GROMACS development team

2025.0                                            Feb 10, 2025                                       GMX-DUMP(1)