NAME

       $O - Convert FASTA to simple GFF3

SYNOPSYS

         % $O [options]

COMMAND-LINE OPTIONS

         --fasta_dir           Directory contain fasta files
                                  (default: ./fasta)
         --gfffilename         Name of GFF3 file to be created
                                  (default: ./out.gff)
         --type                SO type to assign to each feature
                                  (default: EST)
         --source              Text to appear in source column
                                  (default: .)
         --attributes          Additional tag=value pairs to appear in column 9
         --nosequence          Suppress the ##FASTA section (ie, don't
                                  print DNA sequences)

DESCRIPTION

       This script simply takes a collection of fasta files and converts them to simple GFF3 suitable for
       loading into chado.

AUTHORS

       Scott Cain <cain@cshl.org>

       Copyright (c) 2006

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.

perl v5.30.0                                       2019-12-05                                GMOD_FASTA2GFF3(1p)