NAME

       glistquery - print the frequencies of k-mers in a list file

SYNOPSIS

       glistquery <INPUTLIST> [OPTIONS]

OPTIONS

       -v, --version             - print version information and exit

       -h, --help                - print this usage screen and exit

       -stat                     - print statistics of the list file and exit

       -median                   - print min/max/median/average and exit

       -q, --query               - single query word

       -f, --queryfile           - list of query words in a file

       -s, --seqfile             - FastA/FastQ file

       -l, --listfile            - list file made by glistmaker

       -mm, --mismatch NUMBER    - specify number of mismatches (default 0, can be used with -d and -dd)

       -p, --perfectmatch NUMBER - specify number of 3' perfect matches (default 0)

       -min, --minfreq NUMBER    - minimum frequency of the printed words (default 0)

       -max, --maxfreq NUMBER    - maximum frequency of the printed words (default MAX_UINT)

       -all                      - in case of mismatches prints all found words

       -D                        - increase debug level

EXAMPLES

        You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md

SEE ALSO

        glistmaker(1), glistcompare(1), gmer_caller(1), gmer_counter(1)

GenomeTester                                       31 May 2018                                     GLISTQUERY(1)