NAME

       gffutils-cli - Command line interface for python-gffutils.

DESCRIPTION

       usage: gffutils-cli [-h]

              {fetch,children,parents,region,create,common,clean,search,sanitize,rmdups} ...

   positional arguments:
              {fetch,children,parents,region,create,common,clean,search,sanitize,rmdups}

       fetch  Fetch IDs.

       children
              Fetch children from the database according to ID.

       parents
              Fetch parents from the database according to ID.

       region Returns features within provided genomic coordinates.

       create Create a database.

       common Identify child features in common (e.g., common exons across multiple isoforms)

       clean  Perform various QC operations to clean a GFF or GTF file.

       search Search the attributes.

       sanitize
              Sanitize a GFF file. Might get merged with clean feature later. Cleans and adds useful annotations
              to a GFF file: - Ensures that start > end in all entries - Adds an entry id (eid) to each entry to
              make files grep-able Outputs result to stdout unless asked to sanitize in place.

       rmdups Remove duplicates from a GFF file.

   options:
       -h, --help
              show this help message and exit

gffutils-cli 0.13                                 January 2025                                   GFFUTILS-CLI(1)