NAME

       csb-csfrag - build a dynamic library of analogous fragments

DESCRIPTION

       usage: csb-csfrag [-h] -d DATABASE -s SHIFTS [-w WINDOW] [-t TOP] [-c CPU]

              [-v VERBOSITY] [-o OUTPUT] [-f] QUERY

       CSfrag: build a dynamic library of analogous fragments, given a list of assigned chemical shifts.

   positional arguments:
       QUERY  query sequence (FASTA file)

   optional arguments:
       -h, --help
              show this help message and exit

       -d DATABASE, --database DATABASE
              PDBS25 database directory (containing PDBS25cs.scs)

       -s SHIFTS, --shifts SHIFTS
              assigned chemical shifts table (NMR STAR file fragment)

       -w WINDOW, --window WINDOW
              sliding window size (default=8)

       -t TOP, --top TOP
              maximum number per starting position (default=25)

       -c CPU, --cpu CPU
              maximum degree of parallelism (default=4)

       -v VERBOSITY, --verbosity VERBOSITY
              verbosity level (default=1)

       -o OUTPUT, --output OUTPUT
              output directory (default=.)

       -f, --filtered-map
              make an additional filtered fragment map of centroids (default=False)

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

csb-csfrag 1.2.5                                  November 2017                                    CSB-CSFRAG(1)