NAME

       mk_nifti_hdr - Make NIFTI header file

SYNOPSIS

       mk_nifti_hdr [options] [output.nii]

DESCRIPTION

       Make  header  file  according  to  NIFTI file format based on user-supplied parameters for geometry, data
       type, orientation, etc.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --dims <string>, -D <string>
            Set dimensions in voxels. Provided as 'DimsX,DimsY,DimsZ'

       --voxel <string>, -V <string>
            Set voxel size. Provided as 'PixX,PixY,PixZ' [in mm]

       --offset <float>, -O <float>
            Binary data file offset [Default: disabled]

       --byte, -b
            8 bits, unsigned (this is the default)

       --char, -c
            8 bits, signed

       --short, -s
            16 bits, signed

       --ushort, -u
            16 bits, unsigned

       --int, -i
            32 bits signed

       --float, -f
            32 bits floating point

       --double, -d
            64 bits floating point

       --reset-coordinates
            In an imported header, reset the image-to-physical coordinate mapping to an identity matrix.

       --attached
            Create attached header for use in single-file images. Image data must be concatenated directly  onto
            the created header file.

       --import <string>, -I <string>
            Import data from given header file.  [Default: NONE]

       --description <string>
            Set description string [max. 80 characters] [Default: NONE]

AUTHORS

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                   mk_nifti_hdr(1)