NAME

       lmsba - Local voting.

SYNOPSIS

       lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]

DESCRIPTION

       This  tool  combines  multiple multi-class segmentations from co-registered and reformatted atlases using
       locally-weighted Shape-Based Averaging.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --set-padding-value <double>
            Set padding value for input intensity images. Pixels with this value  will  be  ignored.   [Default:
            disabled]

   Label Combination Options
       --patch-radius <none>
            Radius of image patch (in pixels) used for local similarity computation.  [Default: 5]

       --search-radius <none>
            Search  radius  for  local  image patch matching. The algorithm finds the best-matching patch within
            this radius by exhaustive search.  [Default: 0]

       --no-local-outliers
            Detect and exclude local outliers in the Shape Based Averaging procedure.

       --no-global-outliers
            Detect and exclude global outliers  by  removing  poorly  correlated  atlases  prior  to  local  SBA
            procedure.

   Output Options
       --output <string>, -o <string>
            File system path for the output image.  [Default: lsbo.nii ]

AUTHORS

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                          lmsba(1)