NAME

       bamfilterrg.py - filter readgroup(s) from a BAM file

SYNOPSIS

       bamfilterrg.py [-h] [-i BAM] [-r STR] [-n INT] [-S] [-b] [-u]

DESCRIPTION

       filter readgroup(s) from a BAM file

OPTIONS

   optional arguments:
       -h, --help
              show this help message and exit

       -i BAM, --input BAM
              Input BAM file

       -r STR, --readgroup STR
              Read group(s) to extract (comma separated)

       -n INT Output first n alignments and quit

       -S     Input is SAM format

       -b     Output BAM format

       -u     Output uncompressed BAM format (implies -b)

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

bamfilterrg.py 0.0.1+git20170413.ccd079d            June 2020                                  BAMFILTERRG.PY(1)