NAME

       Aevol - an in silico experimental evolution platform

SYNOPSIS

       aevol_misc_extract -h | --help
       aevol_misc_extract -V | --version
       aevol_misc_extract [-t TIMESTEP] [-S SEQ_FILE] [-T TRIANGLE_FILE] [-U NUM_GU] [-a]

DESCRIPTION

       Aevol  is  a  simulation  platform  that  allows  one  to  let populations of digital organisms evolve in
       different conditions and study experimentally the mechanisms responsible for  the  structuration  of  the
       genome and the transcriptome.

       aevol_misc_extract
              extracts  the  genotype  and/or data about the phenotype of individuals in the provided population
              and write them into text files easy to parse with e.g. matlab.

OPTIONS

       -h, --help
              print help, then exit

       -V, --version
              print version number, then exit

       -t TIMESTEP
              specify timestep of the individual(s) of interest

       -S SEQ_FILE
              extract sequences into file SEQ_FILE

       -T TRIANGLE_FILE
              extract phenotypic data into file TRIANGLE_FILE

       -U NUM_GU
              only treat genetic unit #NUM_GU
              default: treat all genetic units

       -a
              treat all the individuals
              default: treat only the best

SEE ALSO

       ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run

aevol 5.0                                           July 2016                                           AEVOL(1)