NAME

       SplitSeq.py - Sorts, samples and splits FASTA/FASTQ sequence files

DESCRIPTION

       usage: SplitSeq.py [--version] [-h]  ...

       Sorts, samples and splits FASTA/FASTQ sequence files

   help:
       --version
              show program's version number and exit

       -h, --help
              show this help message and exit

   subcommands:
              Sequence file operation

       count  Splits sequences files by number of records.

       group  Splits sequences files by annotation.

       sample Randomly samples from unpaired sequences files.

              samplepair

              Randomly samples from paired-end sequences files.

       sort   Sorts sequences files by annotation.

       select Selects sequences from sequence files by annotation.

   output files:
              part<part>

              reads partitioned by count, where <part> is the partition number.

              <field>-<value>

              reads partitioned by annotation <field> and <value>.

              under-<number>

              reads  partitioned  by  numeric  threshold  where  the  annotation value is strictly less than the
              threshold <number>.

              atleast-<number>

              reads partitioned by numeric threshold where the annotation value is greater than or equal to  the
              threshold <number>.

              sorted

              reads sorted by annotation value.

              sorted-part<part>

              reads sorted by annotation value and partitioned by count, where <part> is the partition number.

              sample<i>-n<count>

              randomly  sampled  reads where <i> is a number specifying the sampling instance and <count> is the
              number of sampled reads.

              selected

              reads passing selection criteria.

   output annotation fields:
              None

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

SplitSeq.py 0.6.0                                   May 2020                                      SPLITSEQ.PY(1)