NAME

       R_mds - project distance matrix into lower number of dimensions

SYNOPSIS

       R_mds -k <filtered_kmers.txt> -p <pheno_file>

DESCRIPTION

       Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github
       wiki for more details

OPTIONS

   Required
       -d, --dist
              Distance matrix output by kmds

       -p, --pheno
              Phenotype file used by seer

   Optional
       -o, --output
              Output prefix (default 'all_structure')

       --pc   Number of dimensions to project into (default 3)

       -R     R executable (default 'which R')

       -h, --help
              Displays this message

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

R_mds 1.1.2                                        March 2017                                           R_MDS(1)