NAME

       ParseLog.py - Parses records in the console log of pRESTO modules

DESCRIPTION

       usage: ParseLog.py [--version] [-h] [-o OUT_FILES [OUT_FILES ...]]

              [--outdir  OUT_DIR]  [--outname  OUT_NAME] [--delim DELIMITER DELIMITER DELIMITER] -l RECORD_FILES
              [RECORD_FILES ...] -f FIELDS [FIELDS ...]

       Parses records in the console log of pRESTO modules

   help:
       --version
              show program's version number and exit

       -h, --help
              show this help message and exit

   standard arguments:
       -o OUT_FILES [OUT_FILES ...]
              Explicit output file name(s). Note, this argument cannot be used with the --failed,  --outdir,  or
              --outname  arguments.  If  unspecified,  then  the  output  filename  will  be  based on the input
              filename(s).  (default: None)

       --outdir OUT_DIR
              Specify to changes the output directory to the location specified. The  input  file  directory  is
              used if this is not specified. (default: None)

       --outname OUT_NAME
              Changes  the  prefix of the successfully processed output file to the string specified. May not be
              specified with multiple input files. (default: None)

       --delim DELIMITER DELIMITER DELIMITER
              A list of the three delimiters that separate annotation blocks, field names and values, and values
              within a field, respectively. (default: ('|', '=', ','))

   parsing arguments:
       -l RECORD_FILES [RECORD_FILES ...]
              List of log files to parse. (default: None)

       -f FIELDS [FIELDS ...]
              List of fields to collect. The sequence identifier may be specified using the  hidden  field  name
              "ID".  (default: None)

   output files:
              table

              tab delimited table of the selected annotations.

   output annotation fields:
              <user defined>

              annotation fields specified by the -f argument.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

ParseLog.py 0.6.0                                   May 2020                                      PARSELOG.PY(1)