NAME

       ConvertHeaders.py - Converts sequence headers to the pRESTO format

DESCRIPTION

       usage: ConvertHeaders.py [--version] [-h]  ...

       Converts sequence headers to the pRESTO format

   help:
       --version
              show program's version number and exit

       -h, --help
              show this help message and exit

   subcommands:
              Conversion method

       generic
              Converts sequence headers without a known annotation system.

       454    Converts Roche 454 sequence headers.

       genbank
              Converts NCBI GenBank and RefSeq sequence headers.

       illumina
              Converts Illumina sequence headers.

       imgt   Converts sequence headers output by IMGT/GENE-DB.

       migec  Converts headers for consensus sequence generated by the MIGEC tool.

       sra    Converts NCBI SRA or EMBL-EBI ENA sequence headers.

   output files:
              convert-pass

              reads passing header conversion.

              convert-fail

              raw reads failing header conversion.

   output annotation fields:
              <format defined>

              the annotation fields added are specific to the header format of the input file.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

ConvertHeaders.py 0.6.0                             May 2020                                CONVERTHEADERS.PY(1)