NAME

       AlignSets.py - Multiple aligns input sequences by group

DESCRIPTION

       usage: AlignSets.py [--version] [-h]  ...

       Multiple aligns input sequences by group

   help:
       --version
              show program's version number and exit

       -h, --help
              show this help message and exit

   subcommands:
              Alignment method

       muscle Align sequence sets using muscle.

       offset Align sequence sets using predefined 5' offset.

       table  Create a 5' offset table by primer multiple alignment.

   output files:
              align-pass

              multiple aligned reads.

              align-fail

              raw reads failing multiple alignment.

              offsets-forward

              5' offset table for input into offset subcommand.

              offsets-reverse

              3' offset table for input into offset subcommand.

   output annotation fields:
              None

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

AlignSets.py 0.6.0                                  May 2020                                     ALIGNSETS.PY(1)