NAME

       prokka-genbank_to_fasta_db - rapid annotation of prokaryotic genomes

SYNOPSIS

       prokka-genbank_to_fasta_db [options] [genome1.gbk ...] > proteins.faa

DESCRIPTION

       --help This help.

       --verbose!
              Verbose progress (default '0').

       --format=s
              Input format (default 'genbank').

       --idtag=s
              What tag to use as Fasta ID (default 'protein_id').

       --sep=s
              Separator between EC/gene/product (default '~~~').

       --blank=s
              Replace empty EC/gene/product with this (default '').

       --pseudo!
              Include /pseudo genes (default '0').

       --hypo!
              Include 'hypothetical protein' genes (default '0').

       --minlen=i
              Minimum peptide length (default '0').

prokka-genbank_to_fasta_db 1.11                   February 2015                    PROKKA-GENBANK_TO_FASTA_DB(1)