NAME

       libopenms - library for LC/MS data management and analysis

DESCRIPTION

       This  manual page documents briefly the libopenms package that brings a library for LC/MS data management
       and analysis. OpenMS offers an infrastructure for the development of mass  spectrometry-related  software
       and  powerful  2D  and  3D  visualization  solutions.  OpenMS  offers  analyses  for various quantitation
       protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It provides  build-in  algorithms
       for  de-novo identification and database search, as well as adapters to other state-of-the art tools like
       X!Tandem, Mascot, OMSSA… OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and
       supports easy integration of tools into workflow engines like Knime, Galaxy, WS-Pgrade,  and  TOPPAS  via
       the TOPPtools concept and a unified parameter handling.

BIBLIOGRAPHICAL REFERENCE TO BE CITED

       Marc  Sturm,  Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer,
       Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher  (2008)   OpenMS  –  an  Open-
       Source Software Framework for Mass Spectrometry.  BMC Bioinformatics, 9:163. doi:10.1186/1471-2105-9-163.

SEE ALSO

       topp(1), openms-common(7), openms(7), openms-doc(7).

       The program is documented fully in the Tutorials, that are packaged in openms-doc.

AUTHOR

       This  manual  page  was  written  by Filippo Rusconi <lopippo@debian.org>. Permission is granted to copy,
       distribute and/or modify this document under the terms of the GNU  General  Public  License,  Version  3,
       published by the Free Software Foundation.

        On  a  Debian  system  the complete text of the GNU General Public License version 3 can be found in the
       file `/usr/share/common-licenses/GPL-3'.

                                                  October 2012                                      LIBOPENMS(3)