Provided by: libvcflib-tools_1.0.9+dfsg1-3build1_amd64 bug

NAME
       vcf2fasta


SYNOPSIS
       vcf2fasta options [file]


DESCRIPTION
       Generates sample_seq:N.fa for each sample, reference sequence, and chromosomal copy N in [0,1... ploidy].
       Each  sequence in the fasta file is named using the same pattern used for the file name, allowing them to
       be combined.


OPTIONS
              options:
                  -f, --reference REF     Use this reference when decomposing samples.
                  -p, --prefix PREFIX     Affix this output prefix to each file, none by default
                  -P, --default-ploidy N  Set a default ploidy for samples which do not have
                                          information in the first record (2).
                  -n VAL                  Set string value to output for missing calls

              Type: transformation


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.

vcf2fasta (vcflib)                                                                                  VCF2FASTA(1)