NAME

       Raptor  -  A  fast  and  space-efficient  pre-filter  for  querying  very large collections of nucleotide
       sequences.

DESCRIPTION

       Raptor is a system for approximately searching many queries such as next-generation sequencing  reads  or
       transcripts  in  large  collections of nucleotide sequences. Raptor uses winnowing minimizers to define a
       set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as  a  set  membership
       data  structure  and  probabilistic  thresholding  for  minimizers.  Our  approach allows compression and
       partitioning of the IBF to enable the effective use of secondary memory.

SUBCOMMANDS

       This program must be invoked with one of the following subcommands:
       - build
       - layout
       - prepare
       - search
       - upgrade

       See the respective help page for further details (e.g. by calling Raptor build -h).

       The following options below belong to the top-level parser and need to be specified before the subcommand
       key word. Every argument after the subcommand key word is passed on to the corresponding sub-parser.

OPTIONS

   Common options
       -h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man, ctd, cwl].

VERSION

       Last update: Unavailable
       Raptor version: 3.0.1 (commit unavailable)
       Sharg version: 1.1.1
       SeqAn version: 3.3.0-rc.2

URL

       https://github.com/seqan/raptor

LEGAL

       Raptor Copyright: BSD 3-Clause License
       Author: Enrico Seiler
       Contact: enrico.seiler@fu-berlin.de
       SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       In your academic works please cite: Raptor: A fast and space-efficient pre-filter for querying very large
       collections of nucleotide sequences; Enrico Seiler, Svenja Mehringer, Mitra Darvish,  Etienne  Turc,  and
       Knut Reinert; iScience 2021 24 (7): 102782. doi: https://doi.org/10.1016/j.isci.2021.102782
       For full copyright and/or warranty information see --copyright.

raptor 3.0.1 (commit unavailable)                  Unavailable                                         RAPTOR(1)