NAME

       pullseq - <short_description>

DESCRIPTION

       pullseq - a bioinformatics tool for manipulating fasta and fastq files

       Version: 1.0.2              Name lookup method: UTHASH (Written by bct - copyright 2012-2015)

   Usage:
              pullseq -i <input fasta/fastq file> -n <header names to select>

              pullseq -i <input fasta/fastq file> -m <minimum sequence length>

              pullseq -i <input fasta/fastq file> -g <regex name to match>

              pullseq -i <input fasta/fastq file> -m <minimum sequence length> -a <max sequence length>

              pullseq -i <input fasta/fastq file> -t

              cat <names to select from STDIN> | pullseq -i <input fasta/fastq file> -N

              Options:

       -i, --input,
              Input fasta/fastq file (required)

       -n, --names,
              File of header id names to search for

       -N, --names_stdin, Use STDIN for header id names

       -g, --regex,
              Regular expression to match (PERL compatible; always case-insensitive)

       -m, --min,
              Minimum sequence length

       -a, --max,
              Maximum sequence length

       -l, --length,
              Sequence characters per line (default 50)

       -c, --convert,
              Convert input to fastq/fasta (e.g. if input is fastq, output will be fasta)

       -q, --quality,
              ASCII code to use for fasta->fastq quality conversions

       -e, --excluded,
              Exclude the header id names in the list (-n)

       -t, --count,
              Just count the possible output, but don't write it

       -h, --help,
              Display this help and exit

       -v, --verbose,
              Print extra details during the run

       --version,
              Output version information and exit

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

pullseq 1.0.2                                      March 2021                                         PULLSEQ(1)