NAME

       psort - bacterial localization prediction tool

SYNOPSIS

       psort [-p|-n] [OPTIONS] [SEQFILE]

DESCRIPTION

       Runs  psort  on  the  sequence file SEQFILE .  If SEQFILE isn't provided then sequences will be read from
       STDIN.

       --help, -h
              Displays usage information

       --positive, -p
              Gram positive bacteria

       --negative, -n
              Gram negative bacteria

       --archaea, -a
              Archaea

       --cutoff, -c
              Sets a cutoff value for reported results

       --divergent, -d
              Sets a cutoff value for the multiple localization flag

       --matrix, -m
              Specifies the path to the pftools installation.   If  not  set,  defaults  to  the  value  of  the
              PSORT_PFTOOLS environment variable.

       --format, -f
              Specifies sequence format (default is FASTA)

       --exact, -e
              Skip SCLBLASTe (useful for batch runs of data against itself in SCLBLAST)

       --output, -o
              Specifies  the  format  for  the  output (default is 'normal'  Value can be one of: terse, long or
              normal

       --root, -r
              Specify PSORT_ROOT for running local copies.  If not set, defaults to the value of the  PSORT_ROOT
              environment variable.

       --server, -s
              Specifies the PSort server to use

       --verbose, -v
              Be verbose while running

       --x-skip-localization

       --version
              Print the version of PSortb

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

psort 3.0.4                                        April 2017                                           PSORT(1)