NAME

       PRINSEQ - PReprocessing and INformation of SEQuence data

VERSION

       PRINSEQ-graphs 0.6

SYNOPSIS

       perl prinseq-graphs.pl [-h] [-help] [-version] [-man] [-verbose] [-i input_graph_data_file] [-png_all]
       [-html_all] [-log file]

DESCRIPTION

       PRINSEQ will help you to preprocess your genomic or metagenomic sequence data in FASTA (and QUAL) or
       FASTQ format. The graphs version allows users of the lite version to generate graphs similar to the web
       version.

OPTIONS

       -help | -h
               Print the help message; ignore other arguments.

       -man    Print the full documentation; ignore other arguments.

       -version
               Print program version; ignore other arguments.

       -verbose
               Prints status and info messages during processing.

       ***** INPUT OPTIONS *****
       -i <file>
               Input file containing the graph data generated by the lite version.

       ***** OUTPUT OPTIONS *****
       -o <string>
               By  default,  the  output  files  are  created  in  the  same directory as the input file with an
               additional "_prinseq_graphs_XXXX" in their name (where XXXX is replaced by random  characters  to
               prevent  overwriting  previous  files).  To  change the output filename and location, specify the
               filename using this option. The file extension will be added automatically.

       -png_all
               Use this option to generate PNG files with the graphs.

       -html_all
               Use this option to generate a HTML file with the graphs and tables.

       -log <file>
               Log file to keep track of parameters, errors, etc. The log file name is optional. If no file name
               is given, the log file name will be "inputname.log". If the log file already exists, new  content
               will be added to the file.

AUTHOR

       Robert SCHMIEDER, "<rschmieder_at_gmail_dot_com>"

BUGS

       If    you    find    a    bug    please    email    me    at   "<rschmieder_at_gmail_dot_com>"   or   use
       http://sourceforge.net/tracker/?group_id=315449 so that I can make PRINSEQ better.

COPYRIGHT

       Copyright (C) 2011-2012  Robert SCHMIEDER

LICENSE

       This program is free software: you can redistribute it and/or modify  it  under  the  terms  of  the  GNU
       General  Public License as published by the Free Software Foundation, either version 3 of the License, or
       (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY  WARRANTY;  without  even
       the  implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public
       License for more details.

       You should have received a copy of the GNU General Public License along with this program.  If  not,  see
       <http://www.gnu.org/licenses/>.

perl v5.32.0                                       2020-11-09                                  PRINSEQ-GRAPHS(1)