NAME

       needle-estimate - Estimate expression value of transcript based on the Needle index.

POSITIONAL ARGUMENTS

       ARGUMENT-1 (std::filesystem::path)
              Please provide a sequence file.

OPTIONS

   Basic options:
       -h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man].

       -i, --in (std::filesystem::path)
              Directory where input files can be found. Default: "./".

       -o, --out (std::filesystem::path)
              Directory, where output files should be saved. Default: "expressions.out".

       -t, --threads (unsigned 8 bit integer)
              Number of threads to use. Default: 1. Default: 1.

       -m, --normalization-mode
              Set,  if  normalization  is wanted. Normalization is achieved bydividing the expression value with
              the expression threshold of the first ibf. Only make sense if every bin  has  its  own  expression
              thresholds  (which  is  the  case  if expression thresholds were generated automatically).Default:
              False.

VERSION

       Last update:
       needle-estimate version: 1.0.0
       SeqAn version: 3.3.0

LEGAL

       Author: Mitra Darvish
       SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.

needle-estimate 1.0.0                                                                         NEEDLE-ESTIMATE(1)