NAME

       leon - reference free compression for NGS reads

OPTIONS

   leon options
       -file  (1 arg) :    input file (e.g. FASTA/FASTQ for compress or .leon file for decompress)

       -c     (0 arg) :    compression

       -d     (0 arg) :    decompression

       -nb-cores
              (1 arg) :    number of cores (default is the available number of cores)  [default '0']

       -lossless
              (0 arg) :    switch to lossless compression for qualities (default is lossy. lossy has much higher
              compression rate, and the loss is in fact a gain. lossy is better!)

   compression options
       -kmer-size
              (1 arg) :    size of a kmer  [default '31']

       -abundance
              (1 arg) :    abundance threshold for solid kmers (default inferred)  [default '']

       -init-iterator
              (0 arg) :    init iterator for ibank mode

       -seq-only
              (0 arg) :    store dna seq only, header and quals are discarded, will decompress to fasta (same as
              -noheader -noqual)

       -noheader
              (0 arg) :    discard header

       -noqual
              (0 arg) :    discard quality scores

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

leon 1.4.1                                          May 2018                                             LEON(1)