NAME

       lefse_plot_features.py - determine features of organisms, clades, taxonomic units, genes

DESCRIPTION

       usage: lefse_plot_features.py [-h] [--width WIDTH] [--height HEIGHT]

       [--top TOP] [--bot BOT]
              [--title_font_size   TITLE_FONT_SIZE]   [--class_font_size   CLASS_FONT_SIZE]   [--class_label_pos
              {up,down}] [--subcl_mean {y,n}] [--subcl_median {y,n}] [--font_size FONT_SIZE] [-n flt]  [--format
              {png,pdf,svg}]  [-f  {all,diff,one}]  [--feature_name  FEATURE_NAME]  [--feature_num  FEATURE_NUM]
              [--archive {zip,none}] [--background_color {k,w}] [--dpi DPI] INPUT_FILE INPUT_FILE OUTPUT_FILE

       Cladoplot

   positional arguments:
       INPUT_FILE
              dataset files

       INPUT_FILE
              LEfSe output file

       OUTPUT_FILE
              the file for the output (the zip file if an archive is required, the output directory otherwise)

   optional arguments:
       -h, --help
              show this help message and exit

       --width WIDTH

       --height HEIGHT

       --top TOP
              set maximum y limit (-1.0 means automatic limit)

       --bot BOT
              set minimum y limit (default 0.0, -1.0 means automatic limit)

       --title_font_size TITLE_FONT_SIZE

       --class_font_size CLASS_FONT_SIZE

       --class_label_pos {up,down}

       --subcl_mean {y,n}

       --subcl_median {y,n}

       --font_size FONT_SIZE

       -n flt
              unused

       --format {png,pdf,svg}
              the format for the output file

       -f {all,diff,one}
              wheter to plot all features (all), only those differentially abundant according to LEfSe  or  only
              one (the one given with --feature_name)

       --feature_name FEATURE_NAME
              The name of the feature to plot (levels separated by .)

       --feature_num FEATURE_NUM
              The number of the feature to plot

       --archive {zip,none}

       --background_color {k,w}
              set the color of the background

       --dpi DPI

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_features.py 1.1.2                     September 2021                        LEFSE_PLOT_FEATURES.PY(1)