NAME

       ktImportRDP - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

              Creates a Krona chart from RDP classifications.

       ktImportRDP \

              [options] \ rdp_details_1[,name_1] \ [rdp_details_2[,name_2]] \ ...

       rdp_details
              RDP  assignment  details  downloaded  as  text from the RDP Classifier web portal or output by the
              command line RDP Classifier or Multiclassifier. By default, separate datasets will be created  for
              each input (see [-c]).

       name   A name to show in the list of datasets in the Krona chart (if multiple input files are present and
              [-c] is not specified). By default, the basename of the file will be used.

       [-o <string>]
              Output file name. [Default: 'rdp.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'root']

       [-c]   Combine data from each file, rather than creating separate datasets within the chart.

       [-m <number>]
              Minimum  confidence.  Each  query  sequence  will only be added to taxa that were predicted with a
              confidence score of at least this value.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores. [Default: '0']

       [-y <integer>]
              Hue (0-360) for "good" scores. [Default: '120']

       [-u <string>]
              URL  of  Krona  resources   to   use   instead   of   bundling   them   with   the   chart   (e.g.
              "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not
              work without access to this URL.

       [-qp <string>]
              Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a
              comma  separated  list  in the POST variable "queries", with the current dataset index (from 0) in
              the POST variable "dataset". The url can include additional variables encoded via GET.

ktImportRDP 2.8                                     June 2021                                     KTIMPORTRDP(1)