NAME

       ktImportKrona - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Creates a Krona chart from the data in other Krona charts.

       ktImportKrona \

              [options] \ krona_chart_1[:magnitudes_1][,name_1] \ [krona_chart_2[:magnitudes_2][,name_2]] \ ...

       krona_chart
              Krona  HTML file created with KronaTools or the Krona Excel Template By default, separate datasets
              will be created for each input (see [-c]).

       magnitudes
              Optional file listing query IDs with magnitudes, separated by tabs. This can be  used  to  account
              for read length or contig depth to obtain a more accurate representation of abundance. By default,
              query  sequences  without  specified magnitudes will be assigned a magnitude of 1. Magnitude files
              for assemblies in ACE format can be created with ktGetContigMagnitudes.

       name   A name to show in the list of datasets in the Krona chart (if multiple input files are present and
              [-c] is not specified). By default, the basename of the file will be used.

       [-o <string>]
              Output file name. [Default: 'krona.krona.html']

       [-n <string>]
              Name of the highest level.

       [-c]   Combine data from each file, rather than creating separate datasets within the chart.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores.

       [-y <integer>]
              Hue (0-360) for "good" scores.

       [-u <string>]
              URL  of  Krona  resources   to   use   instead   of   bundling   them   with   the   chart   (e.g.
              "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not
              work without access to this URL.

       [-qp <string>]
              Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a
              comma  separated  list  in the POST variable "queries", with the current dataset index (from 0) in
              the POST variable "dataset". The url can include additional variables encoded via GET.

ktImportKrona 2.8                                   June 2021                                   KTIMPORTKRONA(1)