NAME

       fix-trinity-output - Fix output fastq files from Trinity

DESCRIPTION

       Trinity outputs fastq files that have been 'corrected'

       Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such
       as bowtie2 and snap

       This  script  attempts  to fix that and produce 2 properly paired fastq files and a fastq file containing
       single reads

OPTIONS

       --left, -l <s>:
              fastq file of left reads

       --right, -r <s>:
              fastq file of right reads

       --output, -o <s>:
              output prefix

       --help, -h:
              Show this message

fix-trinity-output 1.0.0                          February 2019                            FIX-TRINITY-OUTPUT(1)