NAME

       countsga - read a ChIP-seq data file and computes the total number of tag counts

SYNOPSIS

       countsga [options] [<] <SGA File>

DESCRIPTION

              - version 1.5.5 where options are:

       -h     Show this help text

       -d     Print debug information

       -f     Feature specifications [name [+|-]]

       -c     Count Cut-off (default is 1)

              The  program  reads  a  ChIP-seq  data  file  (or  from stdin [<]) in SGA format (<SGA File>), and
              computes the total number of tag counts as well as  the  total  sequence  length.   The  <Feature>
              parameter  is  a  name  that corresponds to the second field of the SGA file.  It might optionally
              include the strand specification (+|-).  If no feature is given then all input tags are processed.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

countsga 1.5.5                                     March 2020                                        COUNTSGA(1)