NAME

       bowtie-align-s - ultrafast memory-efficient short read aligner

DESCRIPTION

       usage: bowtie [-h] [--verbose] [--debug] [--large-index]

   options:
       -h, --help
              show this help message and exit

       --verbose

       --debug

       --large-index

       64-bit Built on Debian-reproducible Thu, 25 Jan 2024 12:27:31 +0100 Compiler: gcc version 13.2.0 Options:
       -O3     -Wl,--hash-style=both     -DPOPCNT_CAPABILITY     -Wdate-time    -D_FORTIFY_SOURCE=3    -g    -O2
       -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=.=.  -flto=auto  -ffat-lto-objects
       -fstack-protector-strong   -fstack-clash-protection   -Wformat   -Werror=format-security  -fcf-protection
       -fdebug-prefix-map=.=/usr/src/bowtie-1.3.1-3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer
       -ffile-prefix-map=.=.  -flto=auto  -ffat-lto-objects  -fstack-protector-strong   -fstack-clash-protection
       -Wformat  -Werror=format-security -fcf-protection -fdebug-prefix-map=.=/usr/src/bowtie-1.3.1-3 -std=c++03
       -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now  Sizeof  {int,  long,  long
       long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie-align-s version 1.3.1                      January 2024                                 BOWTIE-ALIGN-S(1)