Provided by: bamkit_0.0.1+git20170413.ccd079d-3_all 

NAME
bamfixflags.py - filter readgroup(s) from a BAM file
SYNOPSIS
bamfixflags.py [-h] [-i BAM] -l FILE [-n INT] [-S] [-b] [-u]
DESCRIPTION
filter readgroup(s) from a BAM file
OPTIONS
optional arguments: -h, --help show this help message and exit -i BAM, --input BAM Input BAM file -l FILE, --lib_info FILE SVTyper JSON file of library information -n INT Output first n alignments and quit -S Input is SAM format -b Output BAM format -u Output uncompressed BAM format (implies -b)
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. bamfixflags.py 0.0.1+git20170413.ccd079d June 2020 BAMFIXFLAGS.PY(1)